\section{\-Class \-Hierarchy}
\-This inheritance list is sorted roughly, but not completely, alphabetically\-:\begin{DoxyCompactList}
\item \contentsline{section}{algorithm}{\pageref{classalgorithm}}{}
\item \contentsline{section}{channels}{\pageref{classchannels}}{}
\item \contentsline{section}{dtcl4}{\pageref{classdtcl4}}{}
\item \contentsline{section}{effective\-\_\-ensemble}{\pageref{classeffective__ensemble}}{}
\item \contentsline{section}{hamilton}{\pageref{classhamilton}}{}
\item \contentsline{section}{\-Hamiltonian$<$ \-C $>$}{\pageref{classHamiltonian}}{}
\item \contentsline{section}{\-Jump\-Op}{\pageref{classJumpOp}}{}
\item \contentsline{section}{jumppaths}{\pageref{classjumppaths}}{}
\item \contentsline{section}{\-My\-Random}{\pageref{classMyRandom}}{}
\item \contentsline{section}{output}{\pageref{classoutput}}{}
\item \contentsline{section}{rate}{\pageref{classrate}}{}
\item \contentsline{section}{simulation}{\pageref{classsimulation}}{}
\item \contentsline{section}{\-Simulation\-Params}{\pageref{classSimulationParams}}{}
\item \contentsline{section}{system}{\pageref{classsystem}}{}
\item \contentsline{section}{\-Ti\-Xml\-Attribute\-Set}{\pageref{classTiXmlAttributeSet}}{}
\item \contentsline{section}{\-Ti\-Xml\-Base}{\pageref{classTiXmlBase}}{}
\begin{DoxyCompactList}
\item \contentsline{section}{\-Ti\-Xml\-Attribute}{\pageref{classTiXmlAttribute}}{}
\item \contentsline{section}{\-Ti\-Xml\-Node}{\pageref{classTiXmlNode}}{}
\begin{DoxyCompactList}
\item \contentsline{section}{\-Ti\-Xml\-Comment}{\pageref{classTiXmlComment}}{}
\item \contentsline{section}{\-Ti\-Xml\-Declaration}{\pageref{classTiXmlDeclaration}}{}
\item \contentsline{section}{\-Ti\-Xml\-Document}{\pageref{classTiXmlDocument}}{}
\item \contentsline{section}{\-Ti\-Xml\-Element}{\pageref{classTiXmlElement}}{}
\item \contentsline{section}{\-Ti\-Xml\-Text}{\pageref{classTiXmlText}}{}
\item \contentsline{section}{\-Ti\-Xml\-Unknown}{\pageref{classTiXmlUnknown}}{}
\end{DoxyCompactList}
\end{DoxyCompactList}
\item \contentsline{section}{\-Ti\-Xml\-Cursor}{\pageref{structTiXmlCursor}}{}
\item \contentsline{section}{\-Ti\-Xml\-Handle}{\pageref{classTiXmlHandle}}{}
\item \contentsline{section}{\-Ti\-Xml\-String}{\pageref{classTiXmlString}}{}
\begin{DoxyCompactList}
\item \contentsline{section}{\-Ti\-Xml\-Out\-Stream}{\pageref{classTiXmlOutStream}}{}
\end{DoxyCompactList}
\item \contentsline{section}{\-Ti\-Xml\-Visitor}{\pageref{classTiXmlVisitor}}{}
\begin{DoxyCompactList}
\item \contentsline{section}{\-Ti\-Xml\-Printer}{\pageref{classTiXmlPrinter}}{}
\end{DoxyCompactList}
\end{DoxyCompactList}
